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The present paper is devoted to clustering geometric graphs. While the standard spectral clustering is often not effective for geometric graphs, we present an effective generalization, which we call higher-order spectral clustering. It resembles in concept the classical spectral clustering method but uses for partitioning the eigenvector associated with a higher-order eigenvalue. We establish the weak consistency of this algorithm for a wide class of geometric graphs which we call Soft Geometric Block Model. A small adjustment of the algorithm provides strong consistency. We also show that our method is effective in numerical experiments even for graphs of modest size.